Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T A add_model() (burstH2MM.ModelError.ModelSet method) Aex_shift (burstH2MM.BurstSort.BurstData property) Aex_stream (burstH2MM.BurstSort.BurstData property) all_eval() (burstH2MM.ModelError.Loglik_Error method) auto_div() (burstH2MM.BurstSort.BurstData method) axline_divs() (in module burstH2MM.Plotting) axline_E() (in module burstH2MM.Plotting) axline_irf_thresh() (in module burstH2MM.Plotting) axline_nano_mean() (in module burstH2MM.Plotting) axline_S() (in module burstH2MM.Plotting) B begin_dwell() (in module burstH2MM.Masking) BIC (burstH2MM.BurstSort.H2MM_list property) bic (burstH2MM.BurstSort.H2MM_result property) BIC_plot() (in module burstH2MM.Plotting) BICp (burstH2MM.BurstSort.H2MM_list property) BICp_plot() (in module burstH2MM.Plotting) bootstrap_err (burstH2MM.BurstSort.H2MM_result attribute) Bootstrap_Error (class in burstH2MM.ModelError) bootstrap_eval() (burstH2MM.BurstSort.H2MM_result method) burst_begin_dwell() (in module burstH2MM.Masking) burst_dwell() (in module burstH2MM.Masking) burst_dwell_num (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) burst_end_dwell() (in module burstH2MM.Masking) burst_ES_scatter() (in module burstH2MM.Plotting) burst_state_counts (burstH2MM.BurstSort.H2MM_result property) burst_type (burstH2MM.BurstSort.H2MM_result property) BurstData (class in burstH2MM.BurstSort) burstH2MM.BurstSort module burstH2MM.Masking module burstH2MM.ModelError module burstH2MM.Plotting module burstH2MM.Simulations module C calc_dwell_nanomean() (burstH2MM.BurstSort.H2MM_result method) (in module burstH2MM.BurstSort) calc_models() (burstH2MM.BurstSort.H2MM_list method) calc_nanohist() (in module burstH2MM.BurstSort) clear_all() (burstH2MM.ModelError.Loglik_Error method) clear_E() (burstH2MM.ModelError.Loglik_Error method) clear_S() (burstH2MM.ModelError.Loglik_Error method) clear_trans() (burstH2MM.ModelError.Loglik_Error method) conf_thresh (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.Simulations.Sim_Result property) conserve_memory (burstH2MM.BurstSort.H2MM_list attribute) covar_E() (burstH2MM.ModelError.Loglik_Error method) (in module burstH2MM.ModelError) covar_E_ll_scatter() (in module burstH2MM.Plotting) covar_param_ll_scatter() (in module burstH2MM.Plotting) covar_S() (burstH2MM.ModelError.Loglik_Error method) (in module burstH2MM.ModelError) covar_S_ll_scatter() (in module burstH2MM.Plotting) covar_trans() (burstH2MM.ModelError.Loglik_Error method) (in module burstH2MM.ModelError) covar_trans_ll_scatter() (in module burstH2MM.Plotting) D data (burstH2MM.BurstSort.BurstData property) div_map (burstH2MM.BurstSort.H2MM_list property) div_models (burstH2MM.BurstSort.BurstData attribute) divisor_scheme (burstH2MM.BurstSort.H2MM_list property) dwell_dur (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_dur_hist() (in module burstH2MM.Plotting) dwell_E (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_E_corr (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_E_hist() (in module burstH2MM.Plotting) dwell_E_tau_scatter() (in module burstH2MM.Plotting) dwell_ES_scatter() (in module burstH2MM.Plotting) dwell_nano_mean (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.Simulations.Sim_Result property) dwell_param_hist() (in module burstH2MM.Plotting) dwell_param_transition() (in module burstH2MM.Plotting) dwell_param_transition_kde_plot() (in module burstH2MM.Plotting) dwell_params (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result attribute) dwell_params_scatter() (in module burstH2MM.Plotting) dwell_ph_counts (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_ph_counts_bg (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_pos (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_S (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_S_corr (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_S_hist() (in module burstH2MM.Plotting) dwell_size() (in module burstH2MM.Masking) dwell_state (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) dwell_tau_hist() (in module burstH2MM.Plotting) dwell_trans() (in module burstH2MM.Masking) dwell_trans_dur_hist() (in module burstH2MM.Plotting) dwell_trans_durs (burstH2MM.BurstSort.H2MM_result property) dwell_trans_from() (in module burstH2MM.Masking) E E (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.Loglik_Error property) (burstH2MM.ModelError.ModelSet property) E_corr (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.ModelSet property) E_corr_err (burstH2MM.ModelError.Bootstrap_Error property) E_corr_std (burstH2MM.ModelError.Bootstrap_Error property) E_covar (burstH2MM.ModelError.Loglik_Error attribute) E_err (burstH2MM.ModelError.Bootstrap_Error property) E_err_bs (burstH2MM.BurstSort.H2MM_result property) E_eval() (burstH2MM.ModelError.Loglik_Error method) E_lh (burstH2MM.ModelError.Loglik_Error property) E_ll (burstH2MM.ModelError.Loglik_Error attribute) E_ll_rng (burstH2MM.ModelError.Loglik_Error attribute) E_rng (burstH2MM.ModelError.Loglik_Error attribute) E_space() (burstH2MM.ModelError.Loglik_Error method) (in module burstH2MM.ModelError) E_std (burstH2MM.ModelError.Bootstrap_Error property) E_std_bs (burstH2MM.BurstSort.H2MM_result property) edge_dwell() (in module burstH2MM.Masking) end_dwell() (in module burstH2MM.Masking) err_E_search() (in module burstH2MM.ModelError) err_param_search() (in module burstH2MM.ModelError) err_S_search() (in module burstH2MM.ModelError) err_trans_search() (in module burstH2MM.ModelError) F find_ideal() (burstH2MM.BurstSort.H2MM_list method) (in module burstH2MM.BurstSort) flex (burstH2MM.ModelError.Loglik_Error property) free_data() (burstH2MM.BurstSort.H2MM_list method) G get_dwell_trans_mask() (burstH2MM.BurstSort.H2MM_result method) get_E_err() (burstH2MM.ModelError.Loglik_Error method) get_S_err() (burstH2MM.ModelError.Loglik_Error method) get_trans_err() (burstH2MM.ModelError.Loglik_Error method) H H2MM_list (class in burstH2MM.BurstSort) H2MM_result (class in burstH2MM.BurstSort) I ICL (burstH2MM.BurstSort.H2MM_list property) icl (burstH2MM.BurstSort.H2MM_result attribute) ICL_plot() (in module burstH2MM.Plotting) index (burstH2MM.BurstSort.H2MM_list attribute) irf_thresh (burstH2MM.BurstSort.BurstData property) K k (burstH2MM.BurstSort.H2MM_result property) L large_params (burstH2MM.BurstSort.H2MM_result attribute) ll_arr (burstH2MM.BurstSort.H2MM_result attribute) ll_E_scatter() (in module burstH2MM.Plotting) ll_param_scatter() (in module burstH2MM.Plotting) ll_S_scatter() (in module burstH2MM.Plotting) ll_trans_scatter() (in module burstH2MM.Plotting) loglik (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.ModelSet property) loglik_err (burstH2MM.BurstSort.H2MM_result attribute) Loglik_Error (class in burstH2MM.ModelError) M make_divisors() (in module burstH2MM.BurstSort) mid_dwell() (in module burstH2MM.Masking) model (burstH2MM.BurstSort.H2MM_result attribute) (burstH2MM.ModelError.Loglik_Error property) model_eval() (burstH2MM.ModelError.Bootstrap_Error class method) models (burstH2MM.BurstSort.BurstData attribute) (burstH2MM.ModelError.Bootstrap_Error attribute) (burstH2MM.ModelError.ModelSet property) ModelSet (class in burstH2MM.ModelError) module burstH2MM.BurstSort burstH2MM.Masking burstH2MM.ModelError burstH2MM.Plotting burstH2MM.Simulations N nanohist (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.Simulations.Sim_Result property) nanos (burstH2MM.BurstSort.BurstData attribute) nanotime_params (burstH2MM.BurstSort.H2MM_result attribute) ndet (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.ModelSet property) new_div() (burstH2MM.BurstSort.BurstData method) not_mid_dwell() (in module burstH2MM.Masking) nphot (burstH2MM.BurstSort.H2MM_result property) nstate (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.Loglik_Error property) (burstH2MM.ModelError.ModelSet property) nstream (burstH2MM.BurstSort.BurstData property) num_opt (burstH2MM.BurstSort.H2MM_list property) O obs (burstH2MM.ModelError.ModelSet property) obs_err (burstH2MM.ModelError.Bootstrap_Error property) obs_std (burstH2MM.ModelError.Bootstrap_Error property) optimize() (burstH2MM.BurstSort.H2MM_list method) opts (burstH2MM.BurstSort.H2MM_list attribute) P param_labels (burstH2MM.BurstSort.H2MM_result attribute) parent (burstH2MM.BurstSort.BurstData property) (burstH2MM.ModelError.Bootstrap_Error attribute) particles (burstH2MM.BurstSort.BurstData attribute) path (burstH2MM.BurstSort.H2MM_result property) path_BIC (burstH2MM.BurstSort.H2MM_list property) path_bic (burstH2MM.BurstSort.H2MM_result attribute) path_BIC_plot() (in module burstH2MM.Plotting) pd_disp() (burstH2MM.BurstSort.H2MM_result method) ph_streams (burstH2MM.BurstSort.BurstData property) plot_burst_index() (in module burstH2MM.Plotting) plot_burst_path() (in module burstH2MM.Plotting) plot_burstjoin() (in module burstH2MM.Plotting) prior (burstH2MM.ModelError.ModelSet property) prior_err (burstH2MM.ModelError.Bootstrap_Error property) prior_std (burstH2MM.ModelError.Bootstrap_Error property) R raw_nanotime_hist() (in module burstH2MM.Plotting) S S (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.Loglik_Error property) (burstH2MM.ModelError.ModelSet property) S__correrr_bs (burstH2MM.BurstSort.H2MM_result property) S_corr (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.ModelSet property) S_corr_err (burstH2MM.ModelError.Bootstrap_Error property) S_corr_std (burstH2MM.ModelError.Bootstrap_Error property) S_corr_std_bs (burstH2MM.BurstSort.H2MM_result property) S_covar (burstH2MM.ModelError.Loglik_Error attribute) S_err (burstH2MM.ModelError.Bootstrap_Error property) S_err_bs (burstH2MM.BurstSort.H2MM_result property) S_eval() (burstH2MM.ModelError.Loglik_Error method) S_lh (burstH2MM.ModelError.Loglik_Error property) S_ll (burstH2MM.ModelError.Loglik_Error attribute) S_ll_rng (burstH2MM.ModelError.Loglik_Error attribute) S_rng (burstH2MM.ModelError.Loglik_Error attribute) S_space() (burstH2MM.ModelError.Loglik_Error method) (in module burstH2MM.ModelError) S_std (burstH2MM.ModelError.Bootstrap_Error property) S_std_bs (burstH2MM.BurstSort.H2MM_result property) scale (burstH2MM.BurstSort.H2MM_result property) scatter_ES() (in module burstH2MM.Plotting) Sim_Result (class in burstH2MM.Simulations) simulate() (in module burstH2MM.Simulations) stat_disc_labels (burstH2MM.BurstSort.H2MM_list attribute) state_nano_mean (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) state_nano_mean_err (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) state_nano_mean_std (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) state_nanotime_hist() (in module burstH2MM.Plotting) state_params (burstH2MM.BurstSort.H2MM_result attribute) stats_frame() (burstH2MM.BurstSort.H2MM_result method) T t_ll_rng (burstH2MM.ModelError.Loglik_Error attribute) t_rate_rng (burstH2MM.ModelError.Loglik_Error attribute) thresh (burstH2MM.ModelError.Loglik_Error property) times (burstH2MM.BurstSort.BurstData attribute) trans (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) (burstH2MM.ModelError.Loglik_Error property) (burstH2MM.ModelError.ModelSet property) trans_arrow_ES() (in module burstH2MM.Plotting) trans_covar (burstH2MM.ModelError.Loglik_Error attribute) trans_err (burstH2MM.ModelError.Bootstrap_Error property) trans_err_high_ll (burstH2MM.BurstSort.H2MM_result property) trans_err_low_ll (burstH2MM.BurstSort.H2MM_result property) trans_eval() (burstH2MM.ModelError.Loglik_Error method) trans_high (burstH2MM.ModelError.Loglik_Error property) trans_ll (burstH2MM.ModelError.Loglik_Error attribute) trans_locs (burstH2MM.BurstSort.H2MM_list property) (burstH2MM.BurstSort.H2MM_result property) trans_low (burstH2MM.ModelError.Loglik_Error property) trans_space() (burstH2MM.ModelError.Loglik_Error method) trans_space_ll() (in module burstH2MM.ModelError) trans_stats() (in module burstH2MM.BurstSort) trans_std (burstH2MM.ModelError.Bootstrap_Error property) trans_std_bs (burstH2MM.BurstSort.H2MM_result property) trim_data() (burstH2MM.BurstSort.H2MM_result method) (burstH2MM.Simulations.Sim_Result method)